Author

Xiaoyu Shan

California Institute of TechnologyORCID 0000-0001-9631-3244Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Microbiology· 2

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:cell type annotation· 1 Approach:contrastive learning· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:ecology & biodiversity· 1 Research Focus:gene regulatory network inference· 1 Assay:metagenomics· 1 Organism:non-human primate· 1

Frequent Co-Authors

Ariane MoraiD· 1 shared Bonny BayotiD· 1 shared Dianne K. NewmaniD· 1 shared Esmeralda Chamorro LegardaiD· 1 shared Guillermo ReyesiD· 1 shared Inês B. TrindadeiD· 1 shared Korbinian O. ThalhammeriD· 1 shared Kunying Li· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperMicrobiology

Ariane MoraORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

MicrobiologyProceedings of the National Academy of SciencesPeer-reviewedJul 27, 2026

Discovery of a phenazine thiol conjugase from sparse data using genome-informed machine learning

Xiaoyu Shan, Inês B. Trindade, Nathaniel R. Glasser…·Dianne K. Newman

The paper uses genome-informed machine learning to discover a new enzyme, PTC, that catalyzes phenazine thioconjugation from sparse data.

DOI 10.1073/pnas.2607571123

protein sequencedeep learning

𝕏 PostBluesky

MicrobiologyApplied and Environmental MicrobiologyPeer-reviewedApr 15, 2025

Microbiome determinants of productivity in whiteleg shrimp aquaculture

Xiaoyu Shan, Kunying Li, Patrizia Stadler…·Otto X. Cordero

This study identifies microbiome factors influencing productivity in whiteleg shrimp aquaculture, showing microbiome composition predicts 50% of larval survival variation but only 10-20% of adult weight variation.

14 citationstop 4%

non-human primatemetagenomics

𝕏 PostBluesky