Author

Xiao Yuan

University of HelsinkiORCID 0000-0001-9788-7717Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Developmental Biology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Organism:human· 2 Organism:bacteria (other)· 1 Approach:Bayesian inference· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:dimensionality reduction· 1 Research Focus:imputation· 1

Frequent Co-Authors

Ádám AranyiD· 1 shared András FormanekiD· 1 shared Carolina WählbyiD· 1 shared Christer SylvéniD· 1 shared Gabriele ParteliD· 1 shared Harri J LähdesmäkiiD· 1 shared Mats F. NilssoniD· 1 shared Sergio Marco SalasiD· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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1 shared paperMicrobiology

Ádám AranyORCID

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2 papers

Recent·Most cited

MicrobiologyGut MicrobesPeer-reviewedOct 5, 2026

✦ In-depth digest

LGTM: Gaussian Process Modulated Neural Topic Modeling for Longitudinal Microbiome

Xiao Yuan, Ádám Arany, András Formanek…·Tommi Vatanen

LGTM couples a neural topic model with additive basis-function Gaussian processes, learning microbial co-abundance topics and how covariates relate to their trajectories in longitudinal gut microbiome data.

DOI 10.1080/19490976.2026.2741488

humanbacteria (other)

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Developmental BiologybioRxivPreprintJul 10, 2021

De novo spatiotemporal modelling of cell-type signatures identifies novel cell populations in the developmental human heart

Sergio Marco Salas, Xiao Yuan, Christer Sylvén…·Gabriele Partel

The paper uses a de novo spatial modeling approach to identify novel cell populations in the developing human heart, revealing previously unreported molecular diversity.

DOI 10.1101/2021.07.10.451822

humanscRNA-seq

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