Author

Michael J. L. Kirby

Colorado State UniversityORCID 0000-0001-9802-9263Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:mouse· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Ahmed M. ElsaadiiD· 1 shared Amy PetersoniD· 1 shared Aravindh NagarajaniD· 1 shared Christopher BowdeniD· 1 shared David W. ThreadgilliD· 1 shared Helene L. Andrews‐PolymenisiD· 1 shared Jyotsana Gupta· 1 shared Kristin ScogginiD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperGenetics

Ahmed M. ElsaadiORCID

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2 papers

Recent·Most cited

Transfer Learning Models for Bacterial Strain Dissemination Biomarkers using Weighted Non-Parallel Proximal Support Vector Machines

Ugochukwu O. Ugwu, Richard A. Slayden, Michael J. L. Kirby

The paper develops a transfer learning model using weighted 1-norm non-parallel proximal support vector machines to identify biomarkers of bacterial infection and dissemination in mice, achieving 97% balanced accuracy.

BMC Bioinformatics · Feb 17, 2026Peer-reviewedBioinformatics

Genetic background influences survival of infections with Salmonella enterica serovar Typhimurium in the Collaborative Cross

Kristin Scoggin, Rachel Lynch, Jyotsana Gupta, Aravindh Nagarajan, Maxwell Sheffield, Ahmed M. Elsaadi, Christopher Bowden, Manuchehr Aminian, Amy Peterson, L. Garry Adams, Michael J. L. Kirby, David W. Threadgill, Helene L. Andrews‐Polymenis

This study investigates the genetic basis of survival differences in Salmonella Typhimurium infections across genetically diverse Collaborative Cross mouse strains, identifying new genomic regions associated with susceptibility and survival.

PLoS Genetics · Apr 13, 2022Peer-reviewedGenetics