Hadrien Gourlé

The paper analyzes the biosynthetic potential of the Bacillus cereus group using genomic data, identifying many novel biosynthetic gene clusters.

This paper introduces Bascet and Zorn, tools for scalable single-cell metagenomic analysis, demonstrating their utility on mock and human saliva samples.

IGUA is a fast and scalable method for delineating gene cluster families in prokaryotic genomes, outperforming existing tools in speed without sacrificing accuracy.

InSilicoSeq 2.0 simulates realistic Illumina-like sequencing reads for various platforms and assay types, including amplicon-based sequencing, and demonstrates its effectiveness with AIRR reads.

The paper introduces a pipeline for metagenome assembly and binning using Nextflow, enabling the reconstruction of MAGs from shotgun metagenomic data.