Daniel Straub

Towards understanding nitrate-reducing Fe(II) oxidation in Ferrigenium straubiae: spotlight on old and new key protein candidates

The paper identifies key proteins and metabolic pathways in Ferrigenium straubiae involved in nitrate-reducing Fe(II) oxidation using transcriptomic and genomic analyses.

Resistance Training Reshapes the Gut Microbiome for Better Health

This study shows resistance training causes time-dependent gut microbiome changes, especially in those with greater strength gains, enriching health-associated taxa like Faecalibacterium and Roseburia hominis.

nf-core/detaxizer: A Benchmarking Study for Decontamination from Human Sequences

The paper benchmarks decontamination tools for removing human sequences from metagenomic data, showing significant variation in effectiveness among tools.

A shade-responsive microprotein in ATHB2 regulates Arabidopsis growth and root development

The paper identifies a microprotein from ATHB2 that regulates Arabidopsis growth and root development by modulating DNA-binding activity and light responses.

How tool combinations in different pipeline versions affect the outcome in RNA-seq analysis

The paper compares RNA-seq pipeline versions and tool combinations to assess their impact on differential expression and gene classification consistency across species.

nf-core/mag: a best-practice pipeline for metagenome hybrid assembly and binning

The paper introduces a pipeline for metagenome assembly and binning using Nextflow, enabling the reconstruction of MAGs from shotgun metagenomic data.