Author

Yuqing Zhang

Gilead Sciences (United States)ORCID 0000-0001-9915-463XUnclaimed ORCID profile · follow to get notified of new preprints

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Yuqing Zhang2 papers · Nankai University

Biology Disciplines

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Bioinformatics· 1 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Approach:statistical model· 2 Research Focus:batch correction / integration· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Assay:ChIP-seq· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Antoine KremeriD· 1 shared Chunmei Pang· 1 shared Hanxing Wu· 1 shared J K CheniD· 1 shared Jianmin WuiD· 1 shared Martin LascouxiD· 1 shared Mingming Zhang· 1 shared Prasad PatiliD· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperEvolutionary Biology

Antoine KremerORCID

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2 papers

Recent·Most cited

Evolutionary BiologybioRxivPreprintSep 24, 2026

Pervasive historical introgression across oak phylogeny shapes gene expression

Yuxiang Zhu, Ruirui Fu, Mingming Zhang…·J K Chen

This study shows that introgression is widespread across oak phylogeny and affects gene expression through cis-regulation and DNA methylation decay.

DOI 10.64898/2026.07.16.739029

multiple specieswhole-genome sequencing

𝕏 PostBluesky

BioinformaticsBiostatisticsPeer-reviewedOct 22, 2021

Overcoming the impacts of two-step batch effect correction on gene expression estimation and inference

Tenglong Li, Yuqing Zhang, Prasad Patil, William Evan Johnson

The paper evaluates the impact of two-step batch correction on gene expression analysis and proposes strategies to mitigate its effects on statistical inference.

29 citations

bulk RNA-seqstatistical model

𝕏 PostBluesky