Author

Jincai Yang

ByteDance (China)ORCID 0000-0002-0033-0187Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:deep learning· 2 Assay:protein structure· 2 Approach:benchmark study· 1 Approach:diffusion model· 1 Approach:experimental assay· 1 Assay:protein sequence· 1 Research Focus:protein structure prediction· 1

Frequent Co-Authors

Hanyu ZhangiD· 2 shared Wenzhi XiaoiD· 2 shared Bo Shi· 1 shared ByteDance AML AI4Science Team· 1 shared Chan Lu· 1 shared Changchun LuiD· 1 shared Chengyue GongiD· 1 shared Jiaqi GuaniD· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 38 mutual co-author links

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2 shared papersBioinformatics

Hanyu ZhangORCID

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2 papers

Recent·Most cited

From Dataset Curation to Unified Evaluation: Revisiting Structure Prediction Benchmarks with PXMeter

Wenzhi Ma, Zhenyu Liu, Jincai Yang, Changchun Lu, Hanyu Zhang, Wenzhi Xiao

The paper introduces PXMeter, a toolkit for evaluating structure prediction models, and benchmarks several models on a curated dataset from the PDB.

bioRxiv · Jul 17, 2025 · PreprintBioinformatics

Protenix - Advancing Structure Prediction Through a Comprehensive AlphaFold3 Reproduction

ByteDance AML AI4Science Team, Xinshi Chen, Yuxuan Zhang, Chan Lu, Wangjing Ma, Jiaqi Guan, Chengyue Gong, Jincai Yang, Hanyu Zhang, Ke Zhang, Shenghao Wu, Kuangqi Zhou, Yanping Yang, Zhenyu Liu, Lan Wang, , Wenzhi Xiao

An open AlphaFold3 reproduction, with weights, inference and training code, that matches AF3 on ligand and RNA benchmarks, beats AlphaFold-Multimer 2.3 on protein interfaces and flags possible memorisation.

bioRxiv · Jan 8, 2025 · PreprintBioinformatics✦ In-depth digest