R. Prabakaran

REFinder improves enzyme discovery from metagenomes by combining alignment-free annotation with targeted assembly, identifying more novel enzymes at lower cost than traditional methods.

Amylo-Pipe integrates mechanistic and kinetic prediction tools for protein and peptide aggregation, offering a web interface for assessing aggregation behavior and supporting protein engineering.

This study evaluates protein embeddings' reliability by introducing a model-agnostic scoring framework to quantify their ability to capture biologically relevant information.

This paper introduces DNA language models to predict enzymatic potential in metagenomic reads, identifying new enzymes and expanding functional annotations.

YAbS catalogues over 2,900 commercially sponsored antibody therapeutics, from clinical entry since 2000 to approval, with milestone-date filtering for pipeline, trend and phase-length analyses; over 450 are openly accessible.

This study evaluates in silico tools for predicting molecular functions of orphan proteins, finding most methods are descriptive rather than predictive.