Janna R. Willoughby

Quantitative comparison of fungal genome assembly strategies using short and long-reads from simulated and empirical sequencing data

This paper benchmarks fungal genome assembly strategies using simulated and empirical data, finding that moderate long-read coverage with short-read polishing provides optimal balance of contiguity, accuracy, and efficiency.

High-quality reference genome for an arid-adapted mammal, the banner-tailed kangaroo rat (Dipodomys spectabilis)

The paper presents a high-quality reference genome for the banner-tailed kangaroo rat, enabling studies on genomic adaptation and population dynamics in arid environments.

Incipient resistance to an effective pesticide results from genetic adaptation and the canalization of gene expression

The paper detects early genetic and transcriptomic changes in sea lamprey exposed to pesticide TFM, showing adaptation without full resistance.