Author

Jiye Cheng

Washington University in St. LouisORCID 0000-0002-0266-3997Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Assay:metagenomics· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Approach:experimental assay· 1 Organism:human· 1 Organism:mouse· 1 Approach:statistical model· 1

Frequent Co-Authors

Hao-Wei ChangiD· 2 shared Jeffrey I. GordoniD· 2 shared Matthew Charles HibberdiD· 2 shared Barak A. CoheniD· 1 shared C.-Y. KaoiD· 1 shared Daniel M. WebberiD· 1 shared Evan M. LeeiD· 1 shared Hannah M. LynniD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersGenomics

Hao-Wei ChangORCID

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2 papers

Recent·Most cited

GenomicsNature CommunicationsPeer-reviewedApr 21, 2026

Enhancing inference of differential gene expression in metatranscriptomes from human microbial communities

Evan M. Lee, Nathan P. McNulty, Matthew Charles Hibberd…·Jeffrey I. Gordon

The paper evaluates differential expression methods for metatranscriptomes, identifies limitations, and proposes improvements using real datasets from gnotobiotic mice and clinical studies.

1 citation

humanmetagenomics

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MicrobiologyProceedings of the National Academy of SciencesPeer-reviewedNov 25, 2025

Using gnotobiotic mice to decipher effects of gut microbiome repair in undernourished children on tuft and goblet cell function

Yi Wang, Hao-Wei Chang, Jiye Cheng…·Jeffrey I. Gordon

This paper uses gnotobiotic mice to model microbiome repair effects in undernourished children, revealing changes in gut cell function and microbial gene expression.

3 citations

mousebulk RNA-seq

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