A structured evaluation and benchmarking of Boolean logical modelling tools
Benjamin Saalfeld, Emanuel Lange, Jacob Krüger, Petra Lutter, Robert Heyer
This paper evaluates 20 Boolean modelling tools for signal transduction and gene regulatory networks using FAIR4RS and usability criteria, finding significant variation in functionality and simulation capabilities.
bioRxiv · Oct 28, 2025 · PreprintSystems Biology