Kirill A. Kryukov

TEM Experiment and Complete Genome Sequencing with Comparative Genomic Analysis to Uncover Potential Probiotic Features of Isolated Lactobacillus delbrueckii subsp. indicus TY-11

This study characterizes the probiotic potential of Lactobacillus delbrueckii subsp. indicus TY-11 through genomic analysis, TEM, and comparative genomics, identifying beneficial traits and safety features.

Comprehensive genomic analysis reveals dynamic evolution of endogenous retroviruses that code for retroviral-like protein domains

The paper analyzes 176,401 ERV-ORFs across 19 mammalian genomes to determine their transcriptional potential and evolutionary dynamics.

Sequence Compression Benchmark (SCB) database - a comprehensive evaluation of reference-free compressors for FASTA-formatted sequences

The paper benchmarks 44 sequence compressors on FASTA-formatted data, identifying optimal tools based on performance metrics like compression ratio and speed.

Nucleotide Archival Format (NAF) enables efficient lossless reference-free compression of DNA sequences

The paper introduces NAF, a lossless reference-free compression format for DNA sequences that offers faster decompression than existing tools while maintaining comparable compression ratios.

A portable system for metagenomic analyses using nanopore-based sequencer and laptop computers can realize rapid on-site determination of bacterial compositions

The paper develops a portable system using nanopore sequencer and laptop computers for rapid on-site bacterial composition analysis, showing comparable or better results than conventional methods.