Author

Ioannis Vardaxis

Norwegian University of Science and TechnologyORCID 0000-0002-0296-1687Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 3 Approach:statistical model· 2 Assay:ChIP-seq· 1 Approach:deep learning· 1 Organism:human· 1 Assay:protein sequence· 1 Assay:proteomics· 1

Frequent Co-Authors

Boris SimovskiiD· 2 shared Richard Stratford· 2 shared Trevor ClancyiD· 2 shared Bo Henry LindqvistiD· 1 shared Brandon MaloneiD· 1 shared Clément MolinéiD· 1 shared Finn DrabløsiD· 1 shared Hugues Fontenelle· 1 shared

Activity by Year

2018-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersBioinformatics

Boris SimovskiORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

Deep learning of antibody epitopes using molecular permutation vectors

Ioannis Vardaxis, Boris Simovski, Irantzu Anzar, Richard Stratford, Trevor Clancy

This paper introduces a deep learning method for predicting B cell epitopes using molecular permutation vectors and 3D protein structures, showing improved accuracy over existing tools.

bioRxiv · Mar 20, 2024 · PreprintBioinformatics

Artificial intelligence predicts the immunogenic landscape of SARS-CoV-2: toward universal blueprints for vaccine designs

Brandon Malone, Boris Simovski, Clément Moliné, Jun Cheng, Marius Gheorghe, Hugues Fontenelle, Ioannis Vardaxis, Simen Tennøe, J-A Malmberg, Richard Stratford, Trevor Clancy

This study uses AI to predict immunogenic epitopes across SARS-CoV-2 variants, identifying vaccine candidates with broad population coverage.

Scientific Reports · Dec 23, 2020Peer-reviewedBioinformatics

MACPET: Model-based Analysis for ChIA-PET

Ioannis Vardaxis, Finn Drabløs, Morten Beck Rye, Bo Henry Lindqvist

MACPET analyzes ChIA-PET data to find protein binding sites with improved motif occurrence, spatial resolution, and false discovery rate compared to MACS.

Biostatistics · Dec 19, 2018Peer-reviewedBioinformatics