Author

Jakub Truszkowski

Centre National de la Recherche ScientifiqueORCID 0000-0002-0312-2981Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:phylogenetics / evolution· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Alexander V. AlekseyenkoiD· 1 shared Asif U. TamuriiD· 1 shared Fabio PardiiD· 1 shared Krister M. SwensoniD· 1 shared Marc A. SuchardiD· 1 shared Nick GoldmaniD· 1 shared Nicola De MaioiD· 1 shared Olivier GascueliD· 1 shared

Activity by Year

2019-2021 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 22 mutual co-author links

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1 shared paperBioinformatics

Alexander V. AlekseyenkoORCID

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2 papers

Recent·Most cited

BioinformaticsBMC BioinformaticsPeer-reviewedMay 28, 2021

Phylogenetic Novelty Scores: a New Approach for Weighting Genetic Sequences

Nicola De Maio, Alexander V. Alekseyenko, William J. Coleman-Smith…·Nick Goldman

The paper introduces phylogenetic novelty scores to weight genetic sequences based on their evolutionary novelty, improving accuracy in character frequency estimation and other applications.

4 citations

whole-genome sequencingstatistical model

𝕏 PostBluesky

BioinformaticsbioRxivPreprintAug 22, 2019

Rapidly Computing the Phylogenetic Transfer Index

Jakub Truszkowski, Olivier Gascuel, Krister M. Swenson

This paper introduces an algorithm to compute the transfer index for all branches in a phylogenetic tree efficiently, improving runtime from O(n²) to O(n log³ n).

2 citations

statistical modelphylogenetics / evolution

𝕏 PostBluesky