Asif U. Tamuri

The paper introduces phylogenetic novelty scores to weight genetic sequences based on their evolutionary novelty, improving accuracy in character frequency estimation and other applications.

This paper introduces HaROLD, a method for haplotype reconstruction from longitudinal viral sequencing data using co-varying variant frequencies, showing high accuracy with synthetic datasets.

This paper investigates the performance of conditional and unconditional maximum likelihood methods for phylogenetic inference with truncated data and finds they perform similarly in SNP datasets.