Author

Jessica E. Prenni

Colorado State UniversityORCID 0000-0002-0337-8450Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:benchmarking· 2 Research Focus:gene regulatory network inference· 1 Assay:metabolomics· 1 Organism:plant (other)· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1 Organism:yeast· 1

Frequent Co-Authors

Adam L. HealeyiD· 1 shared Aivett Bilbao PenaiD· 1 shared Alain AudebertiD· 1 shared Alan K. JarmuschiD· 1 shared Alex DotyiD· 1 shared Allegra T. AroniD· 1 shared Amy M. ShefliniD· 1 shared Andrea L. EvelandiD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 13 mutual co-author links

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1 shared paperGenomics

Adam L. HealeyORCID

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Author profile →

3 papers

Recent·Most cited

The Everything Bagel Feature Finder: Ultra-fast automated feature finding for untargeted metabolomics

Yourae Shin, Yasin El Abiead, Alan K. Jarmusch, Michael J. Strobel, Paul E. Abraham, S.G. Thurmon, Deepa D. Acharya, Allegra T. Aron, Aivett Bilbao Pena, Benjamin P. Bowen, Corey D. Broeckling, Christopher J. Brown, Vincent Charron‐Lamoureux, Xingyuan Chen, Tito Damiani, , Mingxun Wang

The Everything Bagel feature finder automates metabolomics data processing, achieving comparable or better performance than existing methods with significantly reduced computational time.

bioRxiv · Aug 21, 2026 · PreprintBioinformatics

Developing future resilience from signatures of adaptation across the sorghum pangenome

Geoffrey P. Morris, Avril M. Harder, Adam L. Healey, Chloee M. McLaughlin, Brian R. Rice, Clara M Cruet-Burgos, Jerry W. Jenkins, Joanna L. Rifkin, Shengqiang Shu, John J Spiekerman, Carl J. VanGessel, Erica Agnew, Alain Audebert, Kerrie Barry, Ivan R. Baxter, , John T. Lovell

This paper constructs a sorghum pangenome and identifies trait-associated variants to inform climate-aware genome-enabled breeding strategies.

bioRxiv · Aug 1, 2025 · PreprintGenomics

Increased signal to noise ratios within experimental field trials by regressing spatially distributed soil properties as principal components.

Jeffrey C. Berry, Mingsheng Qi, Balasaheb V. Sonawane, Amy M. Sheflin, Asaph B. Cousins, Jessica E. Prenni, Daniel P. Schachtman, Peng Liu, Rebecca S Bart

The paper improves signal-to-noise ratios in field trials by using spatial principal component regression to control for soil property effects on plant traits and microbiomes.

eLife · Jun 29, 2022Peer-reviewedSystems Biology