Author

Jaswinder Singh

Griffith UniversityORCID 0000-0002-0478-5533Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 6

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 4 Approach:statistical model· 4 Research Focus:gene regulatory network inference· 3 Research Focus:protein structure prediction· 3 Approach:deep learning· 2 Assay:DNA methylation· 2 Assay:long-read sequencing· 2 Assay:protein sequence· 2

Frequent Co-Authors

Yaoqi ZhouiD· 6 shared Thomas LitfiniD· 5 shared Kuldip K. PaliwaliD· 4 shared Jaspreet SinghiD· 3 shared Jian ZhaniD· 3 shared Ke CheniD· 2 shared Fan XuiD· 1 shared Guoli SongiD· 1 shared

Activity by Year

2021-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 34 mutual co-author links

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6 shared papersBioinformatics

Yaoqi ZhouORCID

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6 papers

Recent·Most cited

Multiple sequence-alignment-based RNA language model and its application to structural inference

Yikun Zhang, Mei Lang, Jiuhong Jiang, Zhiqiang Gao, Fan Xu, Thomas Litfin, Ke Chen, Jaswinder Singh, Xiansong Huang, Guoli Song, Yonghong Tian, Jian Zhan, Jie Chen, Yaoqi Zhou

This paper introduces an RNA language model based on multiple sequence alignment, showing it can accurately predict RNA structure from sequence data.

Nucleic Acids Research · Oct 21, 2023Peer-reviewedBioinformatics

The Master Database of All Possible RNA Sequences and Its Integration with RNAcmap for RNA Homology Search

Ke Chen, Thomas Litfin, Jaswinder Singh, Jian Zhan, Yaoqi Zhou

The paper builds a large RNA sequence database (MARS) and integrates it with RNAcmap to improve homology search and RNA structure/function inference.

bioRxiv · Feb 1, 2023 · PreprintBioinformatics

Improved RNA homology detection and alignment by automatic iterative search in an expanded database

Jaswinder Singh, Kuldip K. Paliwal, Jaspreet Singh, Thomas Litfin, Yaoqi Zhou

The paper improves RNA homology detection and alignment using an automated iterative search with an expanded database, achieving performance comparable to Rfam.

bioRxiv · Oct 3, 2022 · PreprintBioinformatics

SPOT-Contact-Single: Improving Single-Sequence-Based Prediction of Protein Contact Map using a Transformer Language Model

Jaspreet Singh, Thomas Litfin, Jaswinder Singh, Kuldip K. Paliwal, Yaoqi Zhou

The paper introduces SPOT-Contact-Single, a method that improves single-sequence-based protein contact map prediction using a transformer language model, achieving better performance than existing methods on proteins without homologs.

Bioinformatics · Jan 26, 2022Peer-reviewedBioinformatics

SPOT-1D-LM: Reaching Alignment-profile-based Accuracy in Predicting Protein Secondary and Tertiary Structural Properties without Alignment.

Jaspreet Singh, Kuldip K. Paliwal, Jaswinder Singh, Yaoqi Zhou

The paper introduces SPOT-1D-LM, a model that achieves alignment-profile-based accuracy in predicting protein structural properties without using multiple sequence alignments.

bioRxiv · Oct 16, 2021 · PreprintBioinformatics

RNAcmap: A Fully Automatic Method for Predicting Contact Maps of RNAs by Evolutionary Coupling Analysis

Tongchuan Zhang, Jaswinder Singh, Thomas Litfin, Jian Zhan, Kuldip K. Paliwal, Yaoqi Zhou

RNAcmap automatically predicts RNA contact maps using evolutionary coupling analysis, outperforming manual methods and showing consistency across RNA sequences.

Bioinformatics · May 18, 2021Peer-reviewedBioinformatics