Author

Jiuhong Jiang

ShanghaiTech UniversityORCID 0009-0004-4077-1667Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:deep learning· 3 Research Focus:protein structure prediction· 3 Research Focus:gene regulatory network inference· 2 Assay:long-read sequencing· 2 Approach:transformer / foundation model· 2 Research Focus:benchmarking· 1 Assay:DNA methylation· 1 Approach:large language model· 1

Frequent Co-Authors

Jian ZhaniD· 3 shared Yaoqi ZhouiD· 3 shared Jie CheniD· 2 shared Yikun ZhangiD· 2 shared Fan XuiD· 1 shared Guoli SongiD· 1 shared Guowei LiiD· 1 shared Hao Zhang· 1 shared

Activity by Year

2023-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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3 shared papersBioinformatics

Jian ZhanORCID

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3 papers

Recent·Most cited

RESM: Capturing sequence and structure encoding of RNAs by mapped transfer learning from ESM (evolutionary scale modeling) protein language model

Yikun Zhang, Hao Zhang, Guowei Li, He Wang, Xing Zhang, Xu Hong, Ting-Ting Zhang, Liangsheng Wen, Yu Zhao, Jiuhong Jiang, Jie Chen, Yanjun Chen, Liwei Liu, Jian Zhan, Yaoqi Zhou

RESM improves RNA sequence-structure-function prediction by transferring knowledge from protein language models, outperforming existing models in multiple tasks.

bioRxiv · Aug 9, 2025 · PreprintBioinformatics

RPcontact: Improved prediction of RNA-protein contacts using RNA and protein language models

Jiuhong Jiang, Xing Ming Zhang, Jian Zhan, Zhichao Miao, Yaoqi Zhou

RPcontact predicts RNA-protein contacts using RNA and protein language models, outperforming existing methods on contact prediction.

bioRxiv · Jun 2, 2025 · PreprintBioinformatics

Multiple sequence-alignment-based RNA language model and its application to structural inference

Yikun Zhang, Mei Lang, Jiuhong Jiang, Zhiqiang Gao, Fan Xu, Thomas Litfin, Ke Chen, Jaswinder Singh, Xiansong Huang, Guoli Song, Yonghong Tian, Jian Zhan, Jie Chen, Yaoqi Zhou

This paper introduces an RNA language model based on multiple sequence alignment, showing it can accurately predict RNA structure from sequence data.

Nucleic Acids Research · Oct 21, 2023Peer-reviewedBioinformatics