Interpretable high-resolution dimension reduction of spatial transcriptomics data by SpaHDmap
Junjie Tang, Zihao Chen, Kun Qian, Siyuan Huang, Yang He, Shenyi Yin, Xinyu He, Buqing Ye, Yan Zhuang, Hongxue Meng, Jianzhong Jeff Xi, Ruibin Xi
SpaHDmap improves spatial transcriptomics data resolution by integrating gene expression with histology images, producing interpretable embeddings and detecting refined spatial structures.
bioRxiv · Sep 12, 2024 · PreprintBioinformatics