Author

Buqing Ye

Peking UniversityORCID 0000-0002-3765-8063Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:spatial transcriptomics· 2 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Approach:deep learning· 1 Research Focus:dimensionality reduction· 1 Organism:human· 1 Assay:imaging· 1 Organism:mouse· 1

Frequent Co-Authors

Chao LiiD· 1 shared Chenyang Tao· 1 shared Hanyu Liu· 1 shared Hongxue MengiD· 1 shared Huachao Yan· 1 shared Jianguo XuiD· 1 shared Jianzhong Jeff Xi· 1 shared Jianzhong XiiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBioengineering

Chao LiORCID

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2 papers

Recent·Most cited

Coordinated Enhancement of Molecular and Spatial Fidelity for Biological Inference in Spatial Transcriptomics

Xiaofei Wang, Ningfeng Que, Hanyu Liu, Chenyang Tao, Yu Jiang, Yixuan Jiang, Pinan Zhu, Jianguo Xu, Huachao Yan, Buqing Ye, Stephen Price, Jianzhong Xi, Xinjie Wang, Chao Li

FOCUS improves spatial transcriptomics by coordinating molecular and spatial fidelity across multiple tasks and datasets, revealing clearer biological patterns in immunology, development, and oncology.

bioRxiv · Oct 12, 2026 · PreprintBioengineering

Interpretable high-resolution dimension reduction of spatial transcriptomics data by SpaHDmap

Junjie Tang, Zihao Chen, Kun Qian, Siyuan Huang, Yang He, Shenyi Yin, Xinyu He, Buqing Ye, Yan Zhuang, Hongxue Meng, Jianzhong Jeff Xi, Ruibin Xi

SpaHDmap improves spatial transcriptomics data resolution by integrating gene expression with histology images, producing interpretable embeddings and detecting refined spatial structures.

bioRxiv · Sep 12, 2024 · PreprintBioinformatics