Bartosz Jan Bartmanski

13C flux ratio analysis with FRAPPPE reveals differences in metabolic fluxes between gut Bacteroidota and Escherichia coli

This study uses FRAPPPE to analyze metabolic flux differences between gut Bacteroidota and E. coli, revealing distinct metabolic patterns under anaerobic conditions and in co-metabolism of nucleosides.

Multi-omics profiling of cross-resistance between ceftazidime-avibactam and meropenem identifies common and strain-specific mechanisms in Pseudomonas aeruginosa clinical isolates

This study investigates resistance mechanisms to ceftazidime-avibactam and meropenem in Pseudomonas aeruginosa using multi-omics profiling and identifies strain-specific and common genetic factors associated with resistance.

GEMsembler: cross-tool structural comparison and ensemble modeling improve metabolic model performance

GEMsembler combines multiple metabolic models to improve predictions of gene essentiality and auxotrophy by analyzing and integrating features from different reconstruction tools.

Systematic analysis of gut bacterial carcinogen metabolism and its functional consequences

The paper systematically analyzes gut bacterial metabolism of carcinogens and shows bidirectional interactions with host metabolism, highlighting the microbiome's role in tumorigenesis.