Theodora Lo

Woodsmoke and Diesel Exhaust: Distinct Transcriptomic Profiles in the Human Airway Epithelium

This study compares the transcriptomic effects of woodsmoke and diesel exhaust on human airway epithelial cells, showing distinct gene expression changes and pathways affected.

Characterization and simulation of metagenomic nanopore sequencing data with Meta-NanoSim

Meta-NanoSim simulates and characterizes nanopore metagenomic data to improve microbial abundance estimation and guide algorithm development.

LongStitch: High-quality genome assembly correction and scaffolding using long reads

LongStitch improves draft genome assemblies using long reads, significantly increasing contiguity and accuracy compared to existing methods.

Trans-NanoSim characterizes and simulates nanopore RNA-seq data

Trans-NanoSim simulates nanopore RNA-seq reads using features learned from real data, enabling cost-effective development of analytical tools.