Vladimir Nikolić

GoldRush: A de novo long read genome assembler with linear time complexity

GoldRush is a de novo long read genome assembler with linear time complexity, achieving efficient assembly of large genomes with high contiguity and low memory usage.

Multicellular Reservoir Computing

This paper introduces diffusion-based multicellular reservoir computing as a framework for complex temporal signal processing, demonstrating its feasibility and computational advantages over single-cell systems.

LongStitch: High-quality genome assembly correction and scaffolding using long reads

LongStitch improves draft genome assemblies using long reads, significantly increasing contiguity and accuracy compared to existing methods.

ntJoin: Fast and lightweight assembly-guided scaffolding using minimizer graphs

ntJoin improves genome assemblies using reference sequences through a lightweight graph-based method, achieving faster and more memory-efficient results than existing tools.