Author

Simone M. Cuff

Cardiff UniversityORCID 0000-0002-0546-3579Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:software / tool· 2 Research Focus:batch correction / integration· 1 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1

Frequent Co-Authors

Andreas ArtemiouiD· 2 shared Matthias EberliD· 2 shared Ross J. BurtoniD· 2 shared Matt P. G. MorganiD· 1 shared Raya Ahmed· 1 shared Sarah Baker· 1 shared

Activity by Year

2021-2022 · peak 1/yr

Co-Author Collaboration Network

6 top collaborators · 13 mutual co-author links

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2 shared papersBioinformatics

Andreas ArtemiouORCID

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2 papers

Recent·Most cited

GeoWaVe: Geometric median clustering with weighted voting for ensemble clustering of cytometry data

Ross J. Burton, Simone M. Cuff, Matt P. G. Morgan, Andreas Artemiou, Matthias Eberl

GeoWaVe improves cytometry data clustering by combining geometric median clustering with weighted voting, enhancing robustness and reproducibility across different algorithms.

Bioinformatics · Nov 21, 2022Peer-reviewedBioinformatics

CytoPy: an autonomous cytometry analysis framework

Ross J. Burton, Raya Ahmed, Simone M. Cuff, Sarah Baker, Andreas Artemiou, Matthias Eberl

CytoPy is an open-source Python framework for automated cytometry analysis that handles high-dimensional single-cell data and demonstrates its ability to phenotype T cell subsets and immunophenotype inflammatory infiltrates.

PLoS Computational Biology · Jun 8, 2021Peer-reviewedBioinformatics