Muhammad Bilal Sharif

G-ALN accelerates BWA-aln for ancient DNA analysis using GPU, achieving faster indexing and alignment speeds with identical output.

DNAharvester is a Nextflow pipeline designed to process highly degraded DNA from ancient specimens, improving authentic data recovery through modular workflows and contamination mitigation.

This study shows that reference genome divergence reduces the detectability of aDNA damage patterns in metagenomic data and introduces a correction method to improve damage signal recovery.

This study analyzes genetic diversity in jaguars across three geographic regions, identifying population structure and immune gene variability to guide conservation strategies.