Author

Jorge Almagro

The Francis Crick InstituteORCID 0000-0002-0652-6447Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Assay:imaging· 1 Organism:mouse· 1

Frequent Co-Authors

Agathe ChaigneiD· 1 shared Axel BehrensiD· 1 shared Christopher W. DunsbyiD· 1 shared Guillaume SalbreuxiD· 1 shared Hugh SparksiD· 1 shared Matthew B. SmithiD· 1 shared

Activity by Year

2023-2023 · peak 1/yr

Co-Author Collaboration Network

6 top collaborators · 15 mutual co-author links

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1 shared paperBioinformatics

Agathe ChaigneORCID

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1 paper

Recent·Most cited

Active mesh and neural network pipeline for cell aggregate segmentation

Matthew B. Smith, Hugh Sparks, Jorge Almagro, Agathe Chaigne, Axel Behrens, Christopher W. Dunsby, Guillaume Salbreux

The paper introduces a segmentation pipeline combining neural networks and active meshes to segment and track cells in 3D time-lapse images of organoids and stem cells.

Biophysical Journal · Mar 30, 2023Peer-reviewedBioinformatics