Author

Felipe A. Simão

University of GenevaORCID 0000-0002-0656-4080Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:whole-genome sequencing· 3 Research Focus:differential expression· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Evgeny M. ZdobnoviD· 3 shared Robert Michael WaterhouseiD· 3 shared Hugh M. RobertsoniD· 2 shared Mosè ManniiD· 2 shared Panagiotis IoannidisiD· 2 shared Aaron A. BaumanniD· 1 shared Andrew E. Rosselot· 1 shared Andrew J. RosendaleiD· 1 shared

Activity by Year

2017-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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3 shared papersGenomics

Evgeny M. ZdobnovORCID

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Author profile →

4 papers

Recent·Most cited

SRF-CLICAL: an approach for patient risk stratification using random forest models

Felipe A. Simão, Reija Hieta, Jane A. Pulman, Gabriele Madonna, Paolo A. Ascierto, Rolf Lewensohn, Giuseppe Valentino Masucci

SRF-CLICAL uses random forest models to stratify cancer patients into risk groups based on clinical data, demonstrating its effectiveness on two patient cohorts.

bioRxiv · Jun 22, 2021 · PreprintBioinformatics

Genome-enabled insights into the biology of thrips as crop pests

Dorith Rotenberg, Aaron A. Baumann, Sulley K. Ben-Mahmoud, Olivier Christiaens, Wannes Dermauw, Panagiotis Ioannidis, Chris G. C. Jacobs, Iris M. Vargas Jentzsch, Jonathan E. Oliver, Monica F. Poelchau, Swapna Priya Rajarapu, Derek J. Schneweis, Simon Snoeck, Clauvis Nji Tizi Taning, Dong Wei, , Stephen Richards

The paper presents the first genome sequence for a thysanopteran insect, providing insights into its biology and evolution as a crop pest.

BMC Biology · Oct 18, 2020Peer-reviewedGenomics

The genome of the blind soil-dwelling and ancestrally wingless dipluran Campodea augens, a key reference hexapod for studying the emergence of insect innovations

Mosè Manni, Felipe A. Simão, Hugh M. Robertson, Marco A. Gabaglio, Robert Michael Waterhouse, Bernhard Y. Misof, Oliver Niehuis, Nikolaus U. Szucsich, Evgeny M. Zdobnov

This paper reports the genome of Campodea augens, a dipluran hexapod, and identifies genomic features related to its regenerative abilities and sensory adaptations.

Genome Biology and Evolution · Nov 26, 2019Peer-reviewedGenomics

BUSCO applications from quality assessments to gene prediction and phylogenomics

Robert Michael Waterhouse, Mathieu Seppey, Felipe A. Simão, Mosè Manni, Panagiotis Ioannidis, Guennadi Klioutchnikov, Evgenia V. Kriventseva, Evgeny M. Zdobnov

BUSCO v3 quantifies genome, gene set and transcriptome completeness via near-universal single-copy orthologs and repurposes them for gene predictor training, reference selection, and phylogenomic marker discovery.

Molecular Biology and Evolution · Dec 5, 2017Peer-reviewedBioinformatics✦ In-depth digest