Author

Mathieu Seppey

University of GenevaORCID 0000-0003-3248-011XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Assay:metagenomics· 2 Organism:multiple species· 2 Approach:statistical model· 2 Approach:benchmark study· 1 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Research Focus:genome assembly· 1

Frequent Co-Authors

Evgeny M. ZdobnoviD· 2 shared Mosè ManniiD· 2 shared Amina EchchikiiD· 1 shared Andres BenavidesiD· 1 shared Angélique Escoriza· 1 shared Anne NiknejadiD· 1 shared Aurélie ComteiD· 1 shared Balazs LaurenczyiD· 1 shared

Activity by Year

2017-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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2 shared papersGenomics

Evgeny M. ZdobnovORCID

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3 papers

Recent·Most cited

GenomicsGenome biologyPeer-reviewedApr 28, 2026

LEMMIv2: Benchmarking Framework for Metagenomic and 16S Amplicon Profilers with a Catalogue of Evaluated Tools.

Mathieu Seppey, Andres Benavides, Matthew Berkeley…·Evgeny M. Zdobnov

LEMMIv2 benchmarks metagenomic and 16S amplicon tools using diverse scenarios, sequencing data types, and taxonomies, providing a standardized catalogue for users and developers.

DOI 10.1186/s13059-026-04089-9

metagenomicsbenchmark study

𝕏 PostBluesky

BioinformaticsNucleic Acids ResearchPeer-reviewedSep 15, 2020

The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals

Frederic Bastian, Julien Roux, Anne Niknejad…·Marc Robinson‐Rechavi

Bgee provides an integrated expression atlas and comparative transcriptomics resource for multiple animal species using curated healthy wild-type expression data.

189 citationstop 1%

multiple speciesbulk RNA-seq

𝕏 PostBluesky

BioinformaticsMolecular Biology and EvolutionPeer-reviewedDec 5, 2017

✦ In-depth digest

BUSCO applications from quality assessments to gene prediction and phylogenomics

Robert Michael Waterhouse, Mathieu Seppey, Felipe A. Simão…·Evgeny M. Zdobnov

BUSCO v3 quantifies genome, gene set and transcriptome completeness via near-universal single-copy orthologs and repurposes them for gene predictor training, reference selection, and phylogenomic marker discovery.

2,214 citationstop 1%

multiple specieswhole-genome sequencing

𝕏 PostBluesky