Mosè Manni

LEMMIv2 benchmarks metagenomic and 16S amplicon tools using diverse scenarios, sequencing data types, and taxonomies, providing a standardized catalogue for users and developers.

The paper identifies microbial contaminant sequences in recent human pan-genome studies and highlights issues with false positive novel gene predictions.

This paper reports the genome of Campodea augens, a dipluran hexapod, and identifies genomic features related to its regenerative abilities and sensory adaptations.

The paper identifies a novel Rhabdovirus and a nearly complete drain fly transcriptome from contaminations in clinical samples, highlighting the importance of considering non-human sources in metagenomic analyses.

BUSCO v3 quantifies genome, gene set and transcriptome completeness via near-universal single-copy orthologs and repurposes them for gene predictor training, reference selection, and phylogenomic marker discovery.