Author

Pavan K. Bendapudi

Beth Israel Deaconess Medical CenterORCID 0000-0002-0754-7688Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Genetic & Genomic Medicine· 2

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:statistical model· 2 Research Focus:differential expression· 1 Organism:human· 1 Research Focus:variant calling· 1 Assay:whole-exome sequencing· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Joel B. KrieriD· 2 shared Michael BouzinieriD· 2 shared Shamil R. SunyaeviD· 2 shared Ágnes Tóth-PetróczyiD· 1 shared Alissa K. RobbinsiD· 1 shared Anatoly M. Kokorev· 1 shared Anne B. Skvorak GierschiD· 1 shared Arezou A. GhazaniiD· 1 shared

Activity by Year

2022-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersGenetic & Genomic Medicine

Joel B. KrierORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

AnFiSA: An open-source computational platform for the analysis of sequencing data for rare genetic disease

Michael Bouzinier, Dmitry Etin, S I Trifonov, Viktoria N. Evdokimova, V. Ulitin, Jun Shen, Anatoly M. Kokorev, Arezou A. Ghazani, Yvonne I. Chekaluk, Zayed Albertyn, Anne B. Skvorak Giersch, Cynthia Casson Morton, Feruza Abraamyan, Pavan K. Bendapudi, Shamil R. Sunyaev, , Joel B. Krier

AnFiSA is an open-source platform for analyzing sequencing data in rare genetic disease, addressing reproducibility, adaptability, and explainability in genomic analysis.

Journal of Biomedical Informatics · Aug 23, 2022Peer-reviewedGenetic & Genomic Medicine

Pathway-based Rare Variant Burden Analysis Identifies a Role for the Complement System in an Extreme Phenotype of Sepsis with Coagulopathy

Pavan K. Bendapudi, Sumaiya Nazeen, Justine H. Ryu, Onuralp Söylemez, Betty Rouaisnel, Meaghan E. Colling, Bryce E. Pasko, Alissa K. Robbins, Michael Bouzinier, Lindsay Tomczak, Lindsay Collier, Sanjay Ram, Ágnes Tóth-Petróczy, Joel B. Krier, Elizabeth L. Fieg, , Julie-Aurore Losman

The paper identifies rare variants in the complement system associated with severe sepsis with coagulopathy using pathway-based analysis of whole exome sequencing data.

medRxiv · Feb 24, 2022 · PreprintGenetic & Genomic Medicine