Author

Shan Lu

University of Wisconsin–MadisonORCID 0000-0002-0757-4600Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Shan Lu1 paper · University of Connecticut

Biology Disciplines

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Genomics· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Assay:scRNA-seq· 3 Approach:statistical model· 3 Research Focus:benchmarking· 2 Research Focus:clustering· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Research Focus:dimensionality reduction· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

Sündüz KeleşiD· 3 shared Ali Osman Berk ŞapcıiD· 1 shared Daniel J. ConniD· 1 shared Emery H. BresnickiD· 1 shared Ferhat AyiD· 1 shared Kirby D. JohnsoniD· 1 shared Öznur TaştaniD· 1 shared Shuchen Yan· 1 shared

Activity by Year

2021-2023 · peak 2/yr

Co-Author Collaboration Network

9 top collaborators · 20 mutual co-author links

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3 shared papersGenomics

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3 papers

Recent·Most cited

MuDCoD: Multi-Subject Community Detection in Personalized Dynamic Gene Networks from Single Cell RNA Sequencing

Ali Osman Berk Şapcı, Shan Lu, Shuchen Yan, Ferhat Ay, Öznur Taştan, Sündüz Keleş

MuDCoD detects dynamic gene communities across multiple subjects and time points in scRNA-seq data, revealing subject- and time-specific network variations.

Bioinformatics · Sep 23, 2023Peer-reviewedBioinformatics

Dozer: Debiased personalized gene co-expression networks for population-scale scRNA-seq data

Shan Lu, Sündüz Keleş

Dozer debiases gene-gene correlations in scRNA-seq data to improve co-expression network accuracy across individuals.

Genome Research · Jun 1, 2023Peer-reviewedGenomics

MLG: Multilayer graph clustering for multi-condition scRNA-seq data

Shan Lu, Daniel J. Conn, Shuyang Chen, Kirby D. Johnson, Emery H. Bresnick, Sündüz Keleş

MLG improves clustering accuracy in multi-condition scRNA-seq data by integrating multiple dimensionality reduction methods.

Nucleic Acids Research · Sep 21, 2021Peer-reviewedGenomics