Author

Soner Koc

Seven Bridges Genomics (United States)ORCID 0000-0002-0772-6600Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Genetic & Genomic Medicine· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 3 Research Focus:database / resource· 2 Approach:deep learning· 2 Organism:human· 2 Approach:benchmark study· 1 Research Focus:cell type annotation· 1 Approach:experimental assay· 1 Research Focus:fine-mapping· 1

Frequent Co-Authors

Dennis A. DeaniD· 2 shared Adrián CortésiD· 1 shared Alana L. WelmiD· 1 shared Alexandra Pettet· 1 shared Ali Foroughi pouriD· 1 shared Andreas R. PfenningiD· 1 shared Anjan PurkayasthaiD· 1 shared Bingliang FangiD· 1 shared

Activity by Year

2020-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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2 shared papersBioinformatics

Dennis A. DeanORCID

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Author profile →

3 papers

Recent·Most cited

Small-cohort GWAS discovery with AI over massive functional genomics knowledge graph

Kexin Huang, Tony Zeng, Soner Koc, Alexandra Pettet, Jingtian Zhou, Mika Sarkin Jain, Dongbo Sun, Camilo Ruiz, Hongyu Ren, Laurence J Howe, Tom G. Richardson, Adrián Cortés, Katie Aiello, Kim Branson, Andreas R. Pfenning, , Jure Leskovec

KGWAS improves GWAS power in small cohorts by integrating a functional knowledge graph, discovering more associations for rare diseases.

medRxiv · Dec 3, 2024 · PreprintGenetic & Genomic Medicine

A pan-cancer PDX histology image repository with genomic and pathological annotations for deep learning analysis

Brian S. White, X. Woo, Soner Koc, Todd Sheridan, Steven B. Neuhauser, Shidan Wang, Yvonne A. Evrard, John David Landua, R. Jay Mashl, Sherri R. Davies, Bingliang Fang, Maria Gabriela Raso, Kurt W. Evans, Matthew H. Bailey, Yeqing Chen, , Jeffrey H. Chuang

The paper presents a pan-cancer PDX histology image repository with genomic and pathological annotations for deep learning analysis of tumor regions and xenograft-transplant lymphoproliferative disorder prediction.

bioRxiv · Oct 26, 2022 · PreprintBioinformatics

Strengthening the BioCompute Standard by Crowdsourcing on PrecisionFDA

Sarah H. Stephens, Charles Hadley S. King, Sean Watford, Janisha A. Patel, Dennis A. Dean, Soner Koc, Nan Xiao, Eric Donaldson, Elaine E. Thompson, Anjan Purkayastha, Raja Mazumder, Elaine Johanson, Jonathon Keeney

The paper describes a crowdsourced challenge on precisionFDA to improve the BioCompute standard by gathering feedback and demonstrating BCO creation tools.

bioRxiv · Nov 2, 2020 · PreprintBioinformatics