Author

Elaine Johanson

United States Food and Drug Administration

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1 Assay:long-read sequencing· 1 Approach:machine learning (classical)· 1 Research Focus:software / tool· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Sarah H. Stephens· 2 shared Adrián Muñoz‐BarreraiD· 1 shared Alexey Dolgoborodov· 1 shared Alexey KolesnikoviD· 1 shared Amit JainiD· 1 shared Andigoni MalousiiD· 1 shared Andrew W. CarrolliD· 1 shared Anish G. Prasanna· 1 shared

Activity by Year

2020-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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2 shared papersBioinformatics

Sarah H. Stephens

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2 papers

Recent·Most cited

precisionFDA Truth Challenge V2: Calling variants from short- and long-reads in difficult-to-map regions

Nathan D. Olson, Justin Wagner, Jennifer McDaniel, Sarah H. Stephens, Samuel T. Westreich, Anish G. Prasanna, Elaine Johanson, Emily S. Boja, Ezekiel J. Maier, Omar Serang, David Jáspez, Jose Miguel Lorenzo-Salazar, Adrián Muñoz‐Barrera, Luis A. Rubio‐Rodríguez, Carlos Flores, , Justin M. Zook

The paper evaluates variant calling in difficult genomic regions using short- and long-read sequencing, showing improved performance with new methods and multi-technology approaches.

Cell Genomics · Apr 27, 2022Peer-reviewedBioinformatics

Strengthening the BioCompute Standard by Crowdsourcing on PrecisionFDA

Sarah H. Stephens, Charles Hadley S. King, Sean Watford, Janisha A. Patel, Dennis A. Dean, Soner Koc, Nan Xiao, Eric Donaldson, Elaine E. Thompson, Anjan Purkayastha, Raja Mazumder, Elaine Johanson, Jonathon Keeney

The paper describes a crowdsourced challenge on precisionFDA to improve the BioCompute standard by gathering feedback and demonstrating BCO creation tools.

bioRxiv · Nov 2, 2020 · PreprintBioinformatics