Author

Xiaofeng Yang

South China University of TechnologyORCID 0000-0002-0828-0807Unclaimed ORCID profile · follow to get notified of new preprints

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Xiaofeng Yang1 paper

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Assay:protein structure· 2 Research Focus:protein structure prediction· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Approach:experimental assay· 1 Research Focus:phylogenetics / evolution· 1 Research Focus:protein design· 1

Frequent Co-Authors

Zhanglin LiniD· 3 shared Hongmin CaiiD· 2 shared Junwen Luo· 2 shared Yi CaiiD· 2 shared Jialin WuiD· 1 shared Marco PistolozziiD· 1 shared Wei Zhu· 1 shared Xing Zhang· 1 shared

Activity by Year

2020-2020 · peak 3/yr

Co-Author Collaboration Network

9 top collaborators · 22 mutual co-author links

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3 shared papersBioinformatics

Zhanglin LinORCID

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3 papers

Recent·Most cited

Self-Supervised Representation Learning of Protein Tertiary Structures (PtsRep) and Its Implications for Protein Engineering

Junwen Luo, Yi Cai, Jialin Wu, Hongmin Cai, Xiaofeng Yang, Zhanglin Lin

PtsRep, a self-supervised framework for learning protein tertiary structure representations, outperforms existing methods in predicting protein stability and GFP fluorescence brightness.

bioRxiv · Dec 22, 2020 · PreprintBioinformatics

DeepPSC (protein structure camera): computer vision-based reconstruction of proteins backbone structure from alpha carbon trace as a case study

Xing Zhang, Junwen Luo, Yi Cai, Wei Zhu, Xiaofeng Yang, Hongmin Cai, Zhanglin Lin

This paper introduces DeepPSC, a deep learning method that reconstructs protein backbone structures from alpha carbon traces, outperforming existing methods.

bioRxiv · Aug 12, 2020 · PreprintBioinformatics

A Comprehensive Classification of Coronaviruses and Inferred Cross-Host Transmissions

Yiran Fu, Marco Pistolozzi, Xiaofeng Yang, Zhanglin Lin

This study classifies coronaviruses using protein clusters and infers cross-host transmissions through gene tree reconciliation.

bioRxiv · Aug 11, 2020 · PreprintBioinformatics