Author

Takahiro Ohde

Kyoto UniversityORCID 0000-0002-0870-9175Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Organism:Drosophila· 1 Approach:experimental assay· 1

Frequent Co-Authors

Shinichi MoritaiD· 2 shared Teruyuki NiimiiD· 2 shared Alba Ventós-AlfonsoiD· 1 shared Ana Fernández-NicolasiD· 1 shared Arthur ChéroniD· 1 shared Douglas J. EmleniD· 1 shared Gabriela MachajiD· 1 shared Guillem YllaiD· 1 shared

Activity by Year

2021-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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2 shared papersDevelopmental Biology

Shinichi MoritaORCID

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4 papers

Recent·Most cited

A Generalizable Deep Learning Model for Automated 3D Segmentation of Orthopteran Head Anatomy in Micro-CT

Arthur Chéron, Shinichi Morita, Naoki Morimoto, Takahiro Ohde

This paper develops a deep learning model for automated 3D segmentation of orthopteran head anatomy from micro-CT images, showing comparable performance between sequential fine-tuning and from-scratch training strategies.

bioRxiv · Aug 17, 2026 · PreprintDevelopmental Biology

Reduction of embryonic E93 expression as a key factor for the evolution of insect metamorphosis

Ana Fernández-Nicolas, Gabriela Machaj, Alba Ventós-Alfonso, Viviana Pagone, Toshinori Minemura, Takahiro Ohde, Takaaki Daimon, Guillem Ylla, Xavier Bellés

The paper investigates the role of E93 expression levels in the embryonic development of insects and links its reduction to the evolution of metamorphosis.

bioRxiv · Oct 4, 2022 · PreprintDevelopmental Biology

The draft genome sequence of Japanese rhinoceros beetle Trypoxylus dichotomus

Shinichi Morita, Tomoko Shibata, Tomoaki Nishiyama, Yuuki Kobayashi, Katsushi Yamaguchi, Kouhei Toga, Takahiro Ohde, Hiroki Gotoh, Takaaki Kojima, Jesse N. Weber, Marco Salvemini, Takahiro Bino, Mutsuki Mase, Moe Nakata, Tomoko Mori, , Shuji Shigenobu

This paper presents the de novo genome and transcriptome of the Japanese rhinoceros beetle Trypoxylus dichotomus, providing comprehensive genomic resources for evolutionary and functional studies.

bioRxiv · Jan 10, 2022 · PreprintGenomics

A wing growth organizer in a hemimetabolous insect suggests wing origin

Takahiro Ohde, Taro Mito, Teruyuki Niimi

The paper identifies wing growth organizers in Gryllus bimaculatus and shows their role in wing development and evolution.

bioRxiv · Mar 10, 2021 · PreprintDevelopmental Biology