Author

Sevim Seda Çokoğlu

Middle East Technical UniversityORCID 0000-0002-1055-3966Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genetics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

Dilek KoptekiniD· 2 shared Mehmet SomeliD· 2 shared Arda SevkariD· 1 shared Arda SöyleviD· 1 shared Büşra KatırcıoğluiD· 1 shared Can AlkaniD· 1 shared Ekin SağlıcaniD· 1 shared Elif SüreriD· 1 shared

Activity by Year

2022-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersGenetics

Dilek KoptekinORCID

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2 papers

Recent·Most cited

GeneticsMolecular Ecology ResourcesPeer-reviewedApr 27, 2024

Benchmarking kinship estimation tools for ancient genomes using pedigree simulations

Şevval Aktürk, Igor Mapelli, Merve Nur Güler…·Mehmet Somel

This study benchmarks four kinship estimation tools for ancient genomes using simulated pedigrees and finds varying accuracy depending on the tool and SNP count.

12 citations

whole-genome sequencingstatistical model

𝕏 PostBluesky

GenomicsPLoS Computational BiologyPeer-reviewedDec 14, 2022

CONGA: Copy number variation genotyping in ancient genomes and low-coverage sequencing data

Arda Söylev, Sevim Seda Çokoğlu, Dilek Koptekin…·Mehmet Somel

CONGA genotypes copy number variants in ancient genomes and low-coverage data, showing coherent deletion frequencies and purifying selection across 50 ancient human genomes.

6 citations

humanwhole-genome sequencing

𝕏 PostBluesky