Author

Anirban Chakraborty

Michigan State UniversityORCID 0000-0002-1109-3797Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Anirban Chakraborty1 paper

Biology Disciplines

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Bioinformatics· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Assay:metagenomics· 1 Organism:rat· 1 Assay:spatial transcriptomics· 1

Frequent Co-Authors

Alexandre J. Paquette· 1 shared Alyse K. Hawley· 1 shared Breda NovotnikiD· 1 shared Casey R. J. HubertiD· 1 shared Cort H. ThompsoniD· 1 shared Daniel A. GittinsiD· 1 shared Emma BelliD· 1 shared Erin K. PurcelliD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperBioinformatics

Alexandre J. Paquette

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2 papers

Recent·Most cited

A systematic analysis of brain tissue response to microelectrode material and size with single-cell spatial transcriptomics

Cort H. Thompson, Anirban Chakraborty, Lauren C. Wade-Kleyn, Mark A. Reimers, Erin K. Purcell

This study uses single-cell spatial transcriptomics to analyze the brain's response to different microelectrode materials and sizes in rats, finding that electrode dimensions have a greater impact on tissue response than material type.

bioRxiv · Mar 16, 2026 · PreprintNeuroscience

CANT-HYD: A curated database of phylogeny-derived Hidden Markov Models for annotation of marker genes involved in hydrocarbon degradation

Varada Khot, Jackie Zorz, Daniel A. Gittins, Anirban Chakraborty, Emma Bell, María A. Bautista, Alexandre J. Paquette, Alyse K. Hawley, Breda Novotnik, Casey R. J. Hubert, Marc Strous, Srijak Bhatnagar

CANT-HYD provides a database of HMMs for annotating hydrocarbon degradation marker genes, showing widespread metabolic potential and scalability in metagenomic analysis.

Frontiers in Microbiology · Jan 5, 2022Peer-reviewedBioinformatics