Nuno L. Barbosa‐Morais

This study reanalyzes SG transcriptomes to show mitochondrial RNA enrichment despite methodological biases in isolation techniques.

circStudio is a Python package that integrates actigraphy data preprocessing and circadian modeling into a single framework to streamline circadian rhythm analysis.

The paper introduces markeR, an R package for evaluating gene sets as phenotypic markers, and demonstrates its application to senescence-related gene sets across multiple datasets.

The paper develops an effect size-based method to identify actigraphy markers of the submarine environment, finding that light-related features and DLMO slopes best distinguish study periods and shift schedules.

scStudio provides a user-friendly web application for non-computational users to analyze scRNA-seq data with automated tools and flexible analysis options.

betAS provides a method to analyze and visualize differential alternative splicing using beta distributions to quantify inclusion levels and their precision across groups.

voyAGEr provides a web tool to analyze age-related gene expression changes in 49 human tissues using GTEx RNA-seq data, enabling visualization and statistical exploration of sex- and tissue-specific transcriptomic alterations.

This study shows XAB2 interacts with ERCC1-XPF and XPG to process RNA-loops during mammalian development, linking splicing and DNA repair.

The paper shows androgen-regulated ESRP2 transcription controls alternative splicing in prostate cancer, with implications for metastasis.

psichomics provides a user-friendly R package for alternative splicing analysis, integrating RNA-seq data with clinical features to identify splicing signatures and prognostic factors in breast cancer.