Dmitry N. Konanov

Snappy identifies DNA methylation sites in bacteria using Oxford Nanopore reads without requiring control samples or motif enrichment heuristics.

Snapper is a high-sensitive algorithm for detecting methylation motifs from Oxford Nanopore reads, showing improved enrichment sensitivity over existing tools and identifying new methylation sites in H. pylori.

FunFun evaluates the functional content of fungi or mycobiomes using ITS sequencing data to annotate functional capabilities.

BioCAT is a tool that identifies biosynthetic gene clusters for nonribosomal peptides using structure-based search and improves upon existing methods with position-specific scoring and ensemble modeling.

The paper introduces GCB, a tool for visualizing and analyzing prokaryote genome variability, identifying regions of high complexity associated with genomic rearrangements and horizontal gene transfer.

This study compares dsDNA bacteriophage diversity in stabled and feral horses, finding higher richness and even distribution compared to human viromes, with no over-represented phage genotypes.