Author

Patrick Wu

Vanderbilt UniversityORCID 0000-0002-1437-6688Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Genetics· 1 Pharmacology & Toxicology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:benchmarking· 2 Research Focus:database / resource· 2 Assay:electronic health records· 2 Organism:human· 2 Approach:benchmark study· 1 Research Focus:cell-cell communication· 1 Assay:clinical cohort / trial· 1

Frequent Co-Authors

Joshua C. DennyiD· 3 shared Juan ZhaoiD· 2 shared Lisa A. BastaracheiD· 2 shared Wei‐Qi WeiiD· 2 shared Aliya GiffordiD· 1 shared Brinda Monian· 1 shared Bruno Gonzalez-NolascoiD· 1 shared Chloé Ackaert· 1 shared

Activity by Year

2019-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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3 shared papersBioinformatics

Joshua C. DennyORCID

Mutual co-authors in cluster

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4 papers

Recent·Most cited

Pharmacology & ToxicologyFrontiers in ImmunologyPeer-reviewedJun 30, 2026

The Immunogenicity Database Collaborative (IDC): A Standardized, Publicly Available Database for Clinical Immunogenicity Observations and Insights

Sudhanshu Agnihotri, Bruno Gonzalez-Nolasco, Brinda Monian…·Daniel S. Leventhal

The paper introduces the Immunogenicity Database (IDC) to standardize and integrate clinical immunogenicity data, highlighting trends in anti-drug antibody incidence and risk factors.

DOI 10.3389/fimmu.2026.1816949

clinical cohort / trialbenchmark study

𝕏 PostBluesky

BioinformaticsJMIR Medical InformaticsPeer-reviewedNov 29, 2019

Developing and Evaluating Mappings of ICD-10 and ICD-10-CM Codes to PheCodes

Patrick Wu, Aliya Gifford, Xiangrui Meng…·Wei‐Qi Wei

The paper develops and evaluates mappings from ICD-10 and ICD-10-CM codes to PheCodes, showing high coverage and reproducibility for chronic diseases.

517 citationstop 1%

electronic health recordsstatistical model

𝕏 PostBluesky

BioinformaticsbioRxivPreprintAug 6, 2019

WikiMedMap: Expanding the Phenotyping Mapping Toolbox Using Wikipedia

Lina Mahmoud Sulieman, Patrick Wu, Joshua C. Denny, Lisa A. Bastarache

WikiMedMap maps phenotype strings to clinical vocabularies using Wikipedia, outperforming existing tools in matching accuracy.

2 citations

humanGWAS summary statistics

𝕏 PostBluesky

GeneticsPLoS ONEPeer-reviewedFeb 13, 2019

Using Topic Modeling via Non-negative Matrix Factorization to Identify Relationships between Genetic Variants and Disease Phenotypes: A Case Study of Lipoprotein(a) (LPA)

Juan Zhao, QiPing Feng, Patrick Wu…·Wei‐Qi Wei

The paper uses non-negative matrix factorization to analyze electronic health records and identify associations between a genetic variant in LPA and disease topics, finding positive and negative correlations with cardiovascular diseases and lung cancer.

36 citations

humanelectronic health records

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