Author

Prakruthi Burra

University of California, BerkeleyORCID 0000-0002-1502-8095Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:mouse· 1 Assay:scRNA-seq· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

Frequent Co-Authors

Azza E. AhmediD· 1 shared Carlos F. Buen Abad NajariD· 1 shared Christian A RossiD· 1 shared Christina E. FliegeiD· 1 shared Dave Deandre Istanto· 1 shared Eric W. KleeiD· 1 shared Faisal M. FadlelmolaiD· 1 shared Gregory D. Kapraun· 1 shared

Activity by Year

2021-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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1 shared paperBioinformatics

Azza E. AhmedORCID

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2 papers

Recent·Most cited

Identifying cell-state associated alternative splicing events and their co-regulation

Carlos F. Buen Abad Najar, Prakruthi Burra, Nir Yosef, Liana F. Lareau

The paper introduces Psix, a method to identify cell-state associated alternative splicing events using scRNA-seq data, revealing co-regulated splicing modules and their regulatory networks.

Genome Research · Jul 1, 2022Peer-reviewedGenomics

Design considerations for workflow management systems use in production genomics research and the clinic

Azza E. Ahmed, Joshua M. Allen, Tajesvi Bhat, Prakruthi Burra, Christina E. Fliege, Steven N. Hart, Jacob R. Heldenbrand, Matthew E. Hudson, Dave Deandre Istanto, Michael T. Kalmbach, Gregory D. Kapraun, Katherine I. Kendig, Matthew C. Kendzior, Eric W. Klee, Nate Mattson, , Liudmila Sergeevna Mainzer

This paper evaluates workflow management systems for genomics research and clinical use, comparing their features and suitability across different environments and use cases.

Scientific Reports · Nov 4, 2021Peer-reviewedBioinformatics