Author

Katherine I. Kendig

University of Illinois Urbana-Champaign

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Approach:experimental assay· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

Frequent Co-Authors

Jacob R. Heldenbrand· 3 shared Liudmila Sergeevna MainzeriD· 3 shared Azza E. AhmediD· 2 shared Christian A RossiD· 2 shared Eric W. KleeiD· 2 shared Faisal M. FadlelmolaiD· 2 shared Matthew C. Kendzior· 2 shared Matthew E. HudsoniD· 2 shared

Activity by Year

2019-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersBioinformatics

Jacob R. Heldenbrand

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Author profile →

3 papers

Recent·Most cited

Design considerations for workflow management systems use in production genomics research and the clinic

Azza E. Ahmed, Joshua M. Allen, Tajesvi Bhat, Prakruthi Burra, Christina E. Fliege, Steven N. Hart, Jacob R. Heldenbrand, Matthew E. Hudson, Dave Deandre Istanto, Michael T. Kalmbach, Gregory D. Kapraun, Katherine I. Kendig, Matthew C. Kendzior, Eric W. Klee, Nate Mattson, , Liudmila Sergeevna Mainzer

This paper evaluates workflow management systems for genomics research and clinical use, comparing their features and suitability across different environments and use cases.

Scientific Reports · Nov 4, 2021Peer-reviewedBioinformatics

Computational performance and accuracy of Sentieon DNASeq variant calling workflow

Katherine I. Kendig, Saurabh Baheti, Matthew A. Bockol, Travis Drucker, Steven N. Hart, Jacob R. Heldenbrand, Mikel Hernáez, Matthew E. Hudson, Michael T. Kalmbach, Eric W. Klee, Nathan R. Mattson, Christian A Ross, Morgan L. Taschuk, Eric D. Wieben, Mathieu Wiepert, , Liudmila Sergeevna Mainzer

This study compares the accuracy and performance of Sentieon DNASeq and GATK for single-sample variant calling, finding they are nearly identical in accuracy with Sentieon being faster and more scalable.

Frontiers in Genetics · Aug 20, 2019Peer-reviewedBioinformatics

Managing genomic variant calling workflows with Swift/T

Azza E. Ahmed, Jacob R. Heldenbrand, Yan W. Asmann, Faisal M. Fadlelmola, Daniel S. Katz, Katherine I. Kendig, Matthew C. Kendzior, Tiffany Li, Yingxue Ren, Elliott Rodriguez, Matthew R. Weber, Justin M. Wozniak, Jennie Zermeno, Liudmila Sergeevna Mainzer

The paper describes a Swift/T wrapper for the GATK variant calling workflow to improve portability and maintainability across cluster environments.

PLoS ONE · Jul 9, 2019Peer-reviewedBioinformatics