Matthew E. Hudson

This study identifies metabolic and transcriptional changes in soybean during soybean cyst nematode infection, revealing immune system remodeling and co-option of symbiotic processes.

This study compares genome evolution in two stingless bee species, showing retroelement expansions drive heterochromatin differences and chromosomal rearrangements.

This study shows that Hsp70 chaperones limit intracellular TTR aggregation in yeast, suggesting their decline may contribute to age-related TTR amyloidosis.

This paper constructs a sorghum pangenome and identifies trait-associated variants to inform climate-aware genome-enabled breeding strategies.

This paper evaluates workflow management systems for genomics research and clinical use, comparing their features and suitability across different environments and use cases.

This study compares the accuracy and performance of Sentieon DNASeq and GATK for single-sample variant calling, finding they are nearly identical in accuracy with Sentieon being faster and more scalable.

The paper assembles and annotates the genome of the soybean cyst nematode, revealing duplications and horizontal gene transfer events in effector genes involved in parasitism.

This study benchmarks GATK3.8 and GATK4 to evaluate performance improvements and cost trade-offs in genomic variant calling.