Author

Nicolás Manosalva Pérez

Ghent UniversityORCID 0000-0002-1559-7802Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:gene regulatory network inference· 4 Approach:statistical model· 3 Assay:scRNA-seq· 2 Organism:zebrafish· 2 Organism:Arabidopsis· 1 Assay:ATAC-seq· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1

Frequent Co-Authors

Klaas VandepoeleiD· 4 shared Camilla FerrariiD· 2 shared Andrés Matres Ferrando· 1 shared Arthur CleymaniD· 1 shared Bert De RybeliD· 1 shared Carolin SeyfferthiD· 1 shared Daniël Van DammeiD· 1 shared Darja BelišováiD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

4 shared papersBioinformatics

Klaas VandepoeleORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

A Myb-dominated gene regulatory network universally controls sexual cell fate transitions in diatoms

Gust Bilcke, Arthur Cleyman, Nadine Rijsdijk, Triana Forment, Thomas Eekhout, Darja Belišová, Peter Chaerle, Carolin Seyfferth, Sien Audoor, Michiel Van Bel, Judith Porters, Nicolás Manosalva Pérez, Evelien Mylle, Daniël Van Damme, Bert De Rybel, , Klaas Vandepoele

The paper identifies a Myb-dominated gene regulatory network that controls sexual cell fate transitions in diatoms, revealing its role in size expansion and ploidy transitions.

bioRxiv · Mar 25, 2026 · PreprintMicrobiology

A map of integrated cis-regulatory elements enhances gene regulatory analysis in maize

Jasper Staut, Nicolás Manosalva Pérez, Andrés Matres Ferrando, Indeewari Madhubhashini Dissanayake, Klaas Vandepoele

The paper integrates maize cis-regulatory element profiling methods to improve the identification of functional CREs and applies them to study drought-specific gene regulatory networks.

Plant Communications · May 13, 2025Peer-reviewedBioinformatics

MINI-AC: Inference of plant gene regulatory networks using bulk or single-cell accessible chromatin profiles

Nicolás Manosalva Pérez, Camilla Ferrari, Julia Engelhorn, Thomas Depuydt, Hilde Nelissen, Thomas Hartwig, Klaas Vandepoele

MINI-AC infers plant gene regulatory networks using bulk or single-cell accessible chromatin data, outperforming existing methods in identifying TF binding sites and revealing cell-type specific regulators.

The Plant Journal · Oct 3, 2023Peer-reviewedBioinformatics

MINI-EX: Integrative inference of single-cell gene regulatory networks in plants

Camilla Ferrari, Nicolás Manosalva Pérez, Klaas Vandepoele

MINI-EX infers cell-type specific gene regulatory networks in plants using single-cell transcriptomic data and TF motif information, identifying key regulators in root, leaf, and ear development.

Molecular Plant · Oct 27, 2022Peer-reviewedBioinformatics