Camilla Ferrari

MINI-AC infers plant gene regulatory networks using bulk or single-cell accessible chromatin data, outperforming existing methods in identifying TF binding sites and revealing cell-type specific regulators.

MINI-EX infers cell-type specific gene regulatory networks in plants using single-cell transcriptomic data and TF motif information, identifying key regulators in root, leaf, and ear development.

PhytoNet integrates gene expression data from phytoplankton and land plants to identify co-expressed genes and conserved transcriptional programs across species.

The paper presents an ensemble gene function prediction method for Arabidopsis thaliana and identifies genes involved in mitochondrial complex I formation.

This study identifies AtRsgA as a chloroplast ribosome assembly factor and shows its role in plant viability and chloroplast function through transcriptomic and proteomic analysis of mutants.