Author

JAMES M. MALONE

European Bioinformatics InstituteORCID 0000-0002-1615-2899Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Research Focus:database / resource· 2 Research Focus:software / tool· 2 Research Focus:cell-cell communication· 1 Approach:deep learning· 1 Assay:proteomics· 1 Approach:statistical model· 1

Frequent Co-Authors

Alan R WilliamsiD· 1 shared Alejandra N Gonzalez-BeltraniD· 1 shared Anneli KarlssoniD· 1 shared Camille LaibeiD· 1 shared Carole GobleiD· 1 shared Chris A. MorrisiD· 1 shared Chris MungalliD· 1 shared Donal K. FellowsiD· 1 shared

Activity by Year

2017-2020 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperBioinformatics

Alan R WilliamsORCID

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Author profile →

2 papers

Recent·Most cited

Optimising biomedical relationship extraction with BioBERT: Best practices for data creation

Oliver Giles, Anneli Karlsson, Spyroula Masiala, Simon Richard White, Gianni Cesareni, Livia Perfetto, Joseph Mullen, Michael J. Hughes, Lee Harland, JAMES M. MALONE

The paper demonstrates how fine-tuning BioBERT can accurately identify functional protein links from text, improving upon conventional methods and offering guidelines for data creation.

bioRxiv · Sep 1, 2020 · PreprintBioinformatics

Identifiers for the 21st century:How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data

Julie A. McMurry, Nick Juty, Niklas Blomberg, Tony Burdett, Tom Conlin, Nathalie Conte, Mélanie Courtot, John Deck, Michel Dumontier, Donal K. Fellows, Alejandra N Gonzalez-Beltran, Philipp Gormanns, Jeffrey Sean Grethe, Janna Hastings, Henning Hermjakob, , Helen Parkinson

The paper outlines ten lessons for designing, provisioning, and reusing persistent identifiers to improve data integration in life sciences.

PLoS Biology · Jun 29, 2017Peer-reviewedBioinformatics