Author

Ruiyi Zhang

University of California San DiegoORCID 0000-0002-1620-0707Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Assay:scRNA-seq· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

BAI Ding· 1 shared Danielle Ann GrotjahniD· 1 shared Digvijay SinghiD· 1 shared Eric Xing· 1 shared Hamidreza RahmaniiD· 1 shared Jeremy Parker YangiD· 1 shared Jiahao GaoiD· 1 shared Nathan Lewis· 1 shared

Activity by Year

2026-2026 · peak 1/yr

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10 top collaborators · 45 mutual co-author links

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1 shared paperBioinformatics

BAI Ding

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1 paper

Recent·Most cited

BioinformaticsNature CommunicationsPeer-reviewedFeb 5, 2026

scLong: A Billion-Parameter Foundation Model for Capturing Long-Range Gene Context in Single-Cell Transcriptomics

BAI Ding, Shentong Mo, Ruiyi Zhang…·Eric Xing

scLong is a billion-parameter foundation model that captures long-range gene context in scRNA-seq by modeling all genes and integrating gene knowledge, outperforming existing models in various tasks.

15 citationstop 1%

humanscRNA-seq

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