Author

Cécile Huneau

Institut National de Recherche pour l'Agriculture, l'Alimentation et l'EnvironnementORCID 0000-0002-1633-5708Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 4

Signature Assays, Organisms & Methods

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Organism:plant (other)· 3 Approach:statistical model· 3 Assay:whole-genome sequencing· 3 Research Focus:database / resource· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1

Frequent Co-Authors

Jérôme SalseiD· 4 shared Mamadou Dia SowiD· 3 shared Caroline PontiD· 2 shared Christophe KloppiD· 2 shared Peter CiváňiD· 2 shared William MarandeiD· 2 shared Alexandre SorianoiD· 1 shared Alía Ricardo· 1 shared

Activity by Year

2020-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 26 mutual co-author links

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4 shared papersGenomics

Jérôme SalseORCID

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4 papers

Recent·Most cited

Chromosome-scale assembly of the Cupressus sempervirens genome unravels new insights into the evolutionary history of conifers

Charlotte Cravero, Isabelle Lesur, Nathalie Choisne, Jean‐Charles Leplé, Héléna Vassilieff, Marina de Miguel, Véronique Gautier, Elodie Belmonte, Pailler Vincent, Poncet Charles, Mamadou Dia Sow, Cécile Huneau, Christophe Klopp, François Ehrenmann, GIOVANNI GIUSEPPE VENDRAMIN, , William Marande

The paper presents a chromosome-level genome assembly of Cupressus sempervirens, revealing insights into conifer genome evolution and the role of transposable elements.

bioRxiv · Jul 24, 2026 · PreprintGenomics

Ancestral Genome Reconstruction.

Cléa Siguret, Margaux Olivier, Cécile Huneau, Mamadou Dia Sow, Pierre‐Louis Stenger, Christophe Klopp, Marie‐Laure Martin‐Magniette, Jean‐Philippe Tamby, Peter Civáň, Caroline Pont, Olivier Mathieu, Jérôme Salse

This paper introduces AGR, a pipeline to infer paleogenomes from modern species by using inter-species chromosomal synteny and hierarchical clustering.

bioRxiv · Apr 16, 2026 · PreprintGenomics

Modest transcriptomic response to polyploidization in allohexaploid wheat synthetics

Meriem Banouh, David Armisén, Annaig Bouguennec, Cécile Huneau, Mamadou Dia Sow, Caroline Pont, Jérôme Salse, Peter Civáň

The paper examines transcriptomic responses in synthetic allohexaploid wheat and finds minimal gene expression changes, primarily on the D subgenome, with no significant TE-gene associations.

bioRxiv · Nov 4, 2022 · PreprintGenomics

Genome sequence of the cluster root forming white lupin

Bárbara Hufnagel, André Marques, Alexandre Soriano, L. Pons Marqués, Fanchon Divol, Patrick Doumas, Erika Sallet, Davide Mancinotti, Sébastien Carrère, William Marande, Sandrine Arribat, Jean Keller, Cécile Huneau, Thomas Blein, Delphine Aimé, , Benjamin Péret

The paper provides a high-quality genome sequence of white lupin and identifies a transcription factor regulating cluster root formation.

Nature Communications · Jan 24, 2020Peer-reviewedGenomics