Ancestral Genome Reconstruction.
Cléa SiguretiD, Margaux OlivieriD, Cécile HuneauiD, Mamadou Dia SowiD, Pierre‐Louis StengeriD, Christophe KloppiD, Marie‐Laure Martin‐MagnietteiD, Jean‐Philippe TambyiD, Peter CiváňiD, Caroline PontiD, Olivier MathieuiD, Jérôme SalseiD
Abstract
AGR, for Ancestral Genome Reconstruction, is an automatic publicly available and open-source pipeline to infer paleogenomes from modern species genome comparisons exploiting the concept of inter-species chromosomal synteny relationships hierarchical clustering that can be used to unveil how ancestral genomes, genes, sequences and functions have been shaped during million years of present-day plant evolution.
02 /Specification & Classification
Click any tag to browse matching papers- Citations
- 1
- Organism
- Assay
- Research Focus
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Reconstruction of hundreds of reference ancestral genomes across the eukaryotic kingdom
M. Muffato, A. Louis, … H. R. Crollius·bioRxiv·Feb 17, 2022
- LINGUINE: a phylogeny-aware, orthogroup-based framework for robust ancestral linkage group inference
Carlos Vargas-Chávez, Rosa Fernández·bioRxiv·May 26, 2026
- An automated pipeline for reconstructing whole genome duplications
Lukasz Niezabitowski, Anthony K. Redmond, Aoife McLysaght·bioRxiv·Aug 11, 2026
- Reconstruction of ancestral genomes in presence of gene gain and loss.
Pavel Avdeyev, Shuai Jiang, … Max A. Alekseyev·Journal of Computational BiologyPeer-reviewed·Mar 1, 2016
- ARGformer: learning on ancestral recombination graphs with transformers
David Bonet, Cole Shanks, … Alexander G. Ioannidis·BioinformaticsPeer-reviewed·Jun 24, 2026
- Fault-tolerant pedigree reconstruction from pairwise kinship relations
Edward C. Huang, Kevin A Li, Vagheesh M. Narasimhan·BioinformaticsPeer-reviewed·May 3, 2026