Author

Philippe Hugueney

Institut National de Recherche pour l'Agriculture, l'Alimentation et l'EnvironnementORCID 0000-0002-1641-9274Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Plant Biology· 4 Genomics· 2

Signature Assays, Organisms & Methods

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Organism:virus· 5 Assay:metabolomics· 4 Approach:statistical model· 4 Research Focus:development & morphogenesis· 2 Approach:experimental assay· 2 Research Focus:benchmarking· 1 Research Focus:gene regulatory network inference· 1 Research Focus:genome assembly· 1

Frequent Co-Authors

Éric DuchêneiD· 4 shared Raymonde BaltenweckiD· 4 shared Didier MerdinogluiD· 3 shared Komlan AviaiD· 3 shared Vincent DumasiD· 3 shared Alessandra Maia‐GrondardiD· 2 shared Amandine VeltiD· 2 shared Camille RustenholziD· 2 shared

Activity by Year

2022-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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4 shared papersPlant Biology

Éric DuchêneORCID

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6 papers

Recent·Most cited

Genetic analysis of grapevine wood composition identifies glycosyltransferases involved in the biosynthesis of stilbene glycosides

Hadrien Chepca, S. Réty, Catarina Branco, Jean‐François Chich, Geneviève Riveill, G. Arnold, Gisèle Butterlin, Vincent Dumas, Marie Lahaye, Amandine Velt, Zoé Postel, Éric Duchêne, Komlan Avia, Camille Rustenholz, Raquel Tavares, , Philippe Hugueney

The paper identifies glycosyltransferases involved in the biosynthesis of stilbene glycosides in grapevine wood through metabolomic and genetic analyses.

bioRxiv · Oct 27, 2026 · PreprintPlant Biology

Metabolic biomarker-based phenotyping unveils quantitative effects of plant resistance and pathogen aggressiveness in the grapevine (Vitis spp.) - downy mildew (Plasmopara viticola) pathosystem.

Tyrone Possamai, Raymonde Baltenweck, Sabine Wiedemann‐Merdinoglu, Marie-Céline Lacombe, Marie-Annick Dorne, Matéo Bareyre, Erik Griem, René Fuchs, Jochen Bogs, Éric Duchêne, Pere Mestre, Didier Merdinoglu, Philippe Hugueney

The paper quantifies the effects of plant resistance and pathogen aggressiveness in grapevine-downy mildew interactions using metabolic biomarkers.

Plant Stress · Mar 17, 2026Peer-reviewedPlant Biology

Breeding for durable resistance in crops: defeated loci may act as Trojan horses compromising the effectiveness of major resistance genes.

Tyrone Possamai, Sabine Wiedemann‐Merdinoglu, Marie-Céline Lacombe, Marie-Annick Dorne, Erik Griem, René Fuchs, Jochen Bogs, Raymonde Baltenweck, Komlan Avia, Didier Merdinoglu, Philippe Hugueney

The paper evaluates the effectiveness of single and pyramided resistance loci in grapevine against Plasmopara viticola, finding that defeated loci can reduce resistance efficacy.

iScience · Jan 24, 2026Peer-reviewedPlant Biology

Comparative assessment of genomic, phenomic, and metabolomic prediction models in biparental grapevine breeding populations

Clémentine Borrelli, Louise Delannoy, Hadrien Chepca, Marcos Calcaterra, Elsa Chedid, A. Guillaume, Vincent Dumas, Raymonde Baltenweck, Alessandra Maia‐Grondard, Philippe Hugueney, Didier Merdinoglu, Éric Duchêne, Komlan Avia

The paper benchmarks genomic, phenomic, and metabolomic prediction models for agronomic traits in grapevine breeding populations, finding genomic prediction most accurate and metabolomic intermediate.

bioRxiv · Oct 24, 2025 · PreprintGenomics

The single-berry metabolomic clock paradigm reveals new stages and metabolic switches during grapevine berry development

Flora Tavernier, Stefania Savoi, Laurent Jean-Marie Torregrosa, Philippe Hugueney, Raymonde Baltenweck, Vincent Segura, Charles G. Romieu

The paper identifies new developmental stages and metabolic switches in grapevine berries using a metabolomic clock approach based on single-fruit analysis.

Journal of Experimental Botany · Jan 31, 2025Peer-reviewedPlant Biology

An improved reference of the grapevine genome supports reasserting the origin of the PN40024 highly-homozygous genotype

Amandine Velt, Bianca Frommer, Sophie Blanc, Daniela Holtgräwe, Éric Duchêne, Vincent Dumas, Jérôme Grimplet, Philippe Hugueney, Marie Lahaye, Catherine Kim, José Tomás Matus, David Navarro‐Payá, Luis Orduña, Marcela Karey Tello-Ruiz, Nicola Vitulo, , Camille Rustenholz

The paper improves the grapevine genome reference PN40024.v4 using long-read sequencing, enhancing continuity, haplotype resolution, and gene annotation.

bioRxiv · Dec 21, 2022 · PreprintGenomics